That having been said, I'm ready to try the next ideas you have. I'll grant that it's possible that resource issues are causing sync to be lost when the content is imported, and that by complete coincidence the Trim dialog resource issues just happen to perfectly reverse that sync loss it just doesn't seem very likely.
To me this says that something about how the Trim dialog handles the content is different (and correct) and that there is something wrong with how the main window is handling it. If the problem is resources, shouldn't the Trim dialog be more out of sync, since it is sitting on top of the main window and therefore using more resources? If the problem is random programs interfering, shouldn't the out of sync issue be more pronounced when more resources are being used, or at least somewhat variable instead of a consistent amount out of sync each time? What I am trying to point out and get an answer on is why the video and audio are in sync in the Trim dialog, but are out of sync in the main window, the exact same amount, every time. My CPUs barely tick over half as I am working on the video. I have tried the same actions with my network card, NOD32 and Media Center processes disabled. All files are on this drive, except the original video file, which is on a DVD. My hard drive is defragged every week, and has 39.7Gig free. I have added an NVIDIA GeForce 8400 GS on top of the system board. So far your thnking hasn't solved the problem so. If you want better and more answers,please provide more details like the video card/other software/etc.
Is the program and all of the video/images/music,etc on your system drive? What video card? Did you defrag the hard drive? Use CCleaner to get rid of all the junk files on your computer, Revo Uninstaller to get rid of software you don't use and will never use, and Auslogics defragmenter to defragment. Disconnect from the Internet and shut down NOD ! What you may consider non-major programs may be taking CPU time away from the encoding.
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